Thinapp compatibility issues with IDM

Hi,

Firstly, please excuse my limited knowledge using IDM. I have thinapp'd a number of applications successfully and they work a treat when launched, but encounter issues with some when rebuilt to use IDM for deployment. These thinapp'd applications deliver to the local desktop (C:\ProgramData\VMware\Identity Manager Desktop\thinapp folder) but fail to launch correctly. An example of one application is MobaXterm 9. My understanding is that, if a thinapp'd application launches and works correctly, it should be no different when delivered via IDM, is that correct ?

Environment :

Windows 8.1 x64 desktops

Thinapp 5.1

IDM client  2.4.1-3411811

Thanks in advance.

Jason